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Coupling of the chemical niche and microbiome in the rhizosphere: implications from watermelon grafting

Yang SONG, Chen ZHU, Waseem RAZA, Dongsheng WANG, Qiwei HUANG, Shiwei GUO, Ning LING, Qirong SHEN

Frontiers of Agricultural Science and Engineering 2019, Volume 6, Issue 2,   Pages 206-206 doi: 10.15302/J-FASE-2018234

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Changes in bulk soil affect the disease-suppressive rhizosphere microbiome against Fusarium wilt disease

Lin FU, Wu XIONG, Francisco DINI-ANDREOTE, Beibei WANG, Chengyuan TAO, Yunze RUAN, Zongzhuan SHEN, Rong LI, Qirong SHEN

Frontiers of Agricultural Science and Engineering 2020, Volume 7, Issue 3,   Pages 307-316 doi: 10.15302/J-FASE-2020328

Abstract: However, relatively little information is available about the relationship between bulk and rhizosphereHere, the assembly of banana bulk soil and rhizosphere microbiomes was investigated in a monocultureThe results indicate that disease suppression was mediated by the structure of a suppressive rhizospheremicrobiome with respect to distinct community composition, diversity and abundance.Overall microbiome suppressiveness was primarily related to a particular set of enriched bacterial taxa

Keywords： agricultural practice     bulk soil     disease suppression     rhizosphere ecology    

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Rhizosphere immunity: targeting the underground for sustainable plant health management

Zhong WEI, Ville-Petri FRIMAN, Thomas POMMIER, Stefan GEISEN, Alexandre JOUSSET, Qirong SHEN

Frontiers of Agricultural Science and Engineering 2020, Volume 7, Issue 3,   Pages 317-328 doi: 10.15302/J-FASE-2020346

Abstract: Here we present the concept of rhizosphere immunity, in which plant health is considered as an ecosystemThese interactions can potentially extend the innate plant immune system to a point where the rhizosphereThis might be achieved by bringing together the latest discoveries in phytopathology, microbiome research

Keywords： rhizosphere     soil microbiome     plant immunity     microbial ecology     plant health     soilborne pathogens    

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OPPORTUNITIES AND APPROACHES FOR MANIPULATING SOIL-PLANT MICROBIOMES FOR EFFECTIVE CROP NITROGEN USE IN AGROECOSYSTEMS

Frontiers of Agricultural Science and Engineering 2022, Volume 9, Issue 3,   Pages 333-343 doi: 10.15302/J-FASE-2022450

Abstract:

● Matching nitrification inhibitors with soil properties and nitrifiers is vital to achieve a higher NUE.

Keywords： nitrogen     microbiome     NUE     rhizosphere     phyllosphere     soil food web    

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The Phragmites Root-Inhabiting Microbiome: A Critical Review on Its Composition and Environmental Review

Donglin Wang, Yaohui Bai, Jiuhui Qu

Engineering 2022, Volume 9, Issue 2,   Pages 42-50 doi: 10.1016/j.eng.2021.05.016

Abstract: current understanding of the basic composition of the <i>Phragmites</i> root-inhabiting microbiomeand the complex functions of each member of this microbiome remains incomplete, especially regardingsummarizes the advances that have been made in ecological and biochemical research on the Phragmites root microbiomeFurthermore, culture-based methods have helped to clarify the functions of the microbiome, such as metalBased on the current understanding of the <i>Phragmites</i> root microbiome, we propose that

Keywords： Phragmites     Rhizosphere microbiome     Microbial community composition     Pollution remediation     Constructed    

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Microbial community and functional genes in the rhizosphere of alfalfa in crude oil-contaminated soil

Yi ZHONG, Jian WANG, Yizhi SONG, Yuting LIANG, Guanghe LI

Frontiers of Environmental Science & Engineering 2012, Volume 6, Issue 6,   Pages 797-805 doi: 10.1007/s11783-012-0405-z

Abstract: system constructed with crude oil-contaminated soil was vegetated with alfalfa ( L.) to evaluate the rhizosphereDuring the 80-day experiment, 31.6% of oil was removed from the adjacent rhizosphere (AR); this valuewas 27% and 53% higher than the percentage of oil removed from the far rhizosphere (FR) and from thenon-rhizosphere (NR), respectively.soil compared with NR soil, suggesting that the rhizosphere selectively increased the abundance of these

Keywords： crude oil-contaminated soil     phytoremediation     rhizosphere effects     rhizobox     functional genes    

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The diazotrophic community in oat rhizosphere: effects of legume intercropping and crop growth stage

Yadong YANG, Xiaomin FENG, Yuegao HU, Zhaohai ZENG

Frontiers of Agricultural Science and Engineering 2019, Volume 6, Issue 2,   Pages 162-171 doi: 10.15302/J-FASE-2018212

Abstract:

In this study, the abundance, diversity and structure of the diazotrophic community in oat rhizosphereeffect than growth stage on the abundance, diversity and structure of the diazotrophic community in oat rhizosphere

Keywords： community composition     Illumina MiSeq sequencing     nifH gene     oat-legume intercropping     rhizosphere    

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Effect of rhizosphere on soil microbial community and pyrene biodegradation

SU Yuhong, YANG Xueyun, CHIOU Cary

Frontiers of Environmental Science & Engineering 2008, Volume 2, Issue 4,   Pages 468-474 doi: 10.1007/s11783-008-0078-9

Abstract: With equal planted densities, the efficiencies of PYR degradation in rhizosphere with sudan grass, whitebiodegradation was attributed to the enhanced bacterial population and activity induced by plant roots in the rhizosphere
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Integrated analysis of gut microbiome and host immune responses in COVID-19

Frontiers of Medicine 2022, Volume 16, Issue 2,   Pages 263-275 doi: 10.1007/s11684-022-0921-6

Abstract: Emerging evidence indicates that the gut microbiome contributes to the host immune response to infectiousHere, to explore the role of the gut microbiome in the host immune responses in COVID-19, we conductedWe found that the diversity of the gut microbiome was reduced in severe/critical COVID-19 cases comparedIn addition, an integrative analysis of gut microbiome and the transcriptome of peripheral blood mononuclear

Keywords： COVID-19     SARS-COV-2     gut microbiome     immune response    

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Sulfur mediated heavy metal biogeochemical cycles in coastal wetlands: From sediments, rhizosphere to

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 8, doi: 10.1007/s11783-022-1523-x

Abstract:

• In sediments, the transformation of sulfides may lead to the release of heavy metals.

Keywords： Coastal wetland     Heavy metal     Sulfur     Biogeochemical cycle    

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Microbiome subsets determine tumor prognosis and molecular characteristics of clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome data

Frontiers of Medicine doi: 10.1007/s11684-023-1029-3

Abstract: Microbiome subsets determine tumor prognosis and molecular characteristics of clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome data

Keywords： tumor prognosis molecular     Microbiome subsets determine     center analysis microbiome     transcriptome data    

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Understanding building-occupant-microbiome interactions toward healthy built environments: A review

Shuai Li, Zhiyao Yang, Da Hu, Liu Cao, Qiang He

Frontiers of Environmental Science & Engineering 2021, Volume 15, Issue 4, doi: 10.1007/s11783-020-1357-3

Abstract: Abstract • The built environment, occupants, and microbiomes constitute an integrated ecosystem. • This review summarizes research progress which has focused primarily on microbiomes. • Critical research needs include studying impacts of occupant behaviors on microbiomes. Built environments, occupants, and microbiomes constitute a system of ecosystems with extensive interactions that impact one another. Understanding the interactions between these systems is essential to develop strategies for effective management of the built environment and its inhabitants to enhance public health and well-being. Numerous studies have been conducted to characterize the microbiomes of the built environment. This review summarizes current progress in understanding the interactions between attributes of built environments and occupant behaviors that shape the structure and dynamics of indoor microbial communities. In addition, this review also discusses the challenges and future research needs in the field of microbiomes of the built environment that necessitate research beyond the basic characterization of microbiomes in order to gain an understanding of the causal mechanisms between the built environment, occupants, and microbiomes, which will provide a knowledge base for the development of transformative intervention strategies toward healthy built environments. The pressing need to control the transmission of SARS-CoV-2 in indoor environments highlights the urgency and significance of understanding the complex interactions between the built environment, occupants, and microbiomes, which is the focus of this review.

Keywords： Microbiome     Built Environment     Occupant     Health    

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Meter-scale variation within a single transect demands attention to taxon accumulation curves in riverine microbiome

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 5, doi: 10.1007/s11783-022-1543-6

Abstract:

● Riverine microbiomes exhibited hyperlocal variation within a single transect.

Keywords： Microbiome     Freshwater     Taxon accumulation curve     Community assembly    

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Human microbiome and prostate cancer development: current insights into the prevention and treatment

Solmaz Ohadian Moghadam, Seyed Ali Momeni

Frontiers of Medicine 2021, Volume 15, Issue 1,   Pages 11-32 doi: 10.1007/s11684-019-0731-7

Abstract: The human microbiome may influence prostate cancer development.several studies have focused on the effect of prostate infections as well as the composition of the human microbiomeIn healthy individuals, the microbiome plays a crucial role in the maintenance of homeostasis of bodyFurthermore, we discuss strategies to target the microbiome for risk assessment, prevention, and treatment

Keywords： microbiome     prostate cancer     prevention     treatment     molecular pathological epidemiology (MPE)     biomarker    

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Improving the efficiency and effectiveness of global phosphorus use: focus on root and rhizosphere levels

Uwe LUDEWIG, Lixing YUAN, Günter NEUMANN

Frontiers of Agricultural Science and Engineering 2019, Volume 6, Issue 4,   Pages 357-365 doi: 10.15302/J-FASE-2019275

Abstract: Rhizosphere processes assist in mobilizing and capturing sparingly soluble phosphate from rock phosphate

Keywords： acquisition efficiency     plant growth promoting rhizobacteria     phosphate     use efficiency     utilization efficiency    

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Title Author Date Type Operation

Coupling of the chemical niche and microbiome in the rhizosphere: implications from watermelon grafting

Yang SONG, Chen ZHU, Waseem RAZA, Dongsheng WANG, Qiwei HUANG, Shiwei GUO, Ning LING, Qirong SHEN

Journal Article

Changes in bulk soil affect the disease-suppressive rhizosphere microbiome against Fusarium wilt disease

Lin FU, Wu XIONG, Francisco DINI-ANDREOTE, Beibei WANG, Chengyuan TAO, Yunze RUAN, Zongzhuan SHEN, Rong LI, Qirong SHEN

Journal Article

Rhizosphere immunity: targeting the underground for sustainable plant health management

Zhong WEI, Ville-Petri FRIMAN, Thomas POMMIER, Stefan GEISEN, Alexandre JOUSSET, Qirong SHEN

Journal Article

OPPORTUNITIES AND APPROACHES FOR MANIPULATING SOIL-PLANT MICROBIOMES FOR EFFECTIVE CROP NITROGEN USE IN AGROECOSYSTEMS

Journal Article

The Phragmites Root-Inhabiting Microbiome: A Critical Review on Its Composition and Environmental

Donglin Wang, Yaohui Bai, Jiuhui Qu

Journal Article

Microbial community and functional genes in the rhizosphere of alfalfa in crude oil-contaminated soil

Yi ZHONG, Jian WANG, Yizhi SONG, Yuting LIANG, Guanghe LI

Journal Article

The diazotrophic community in oat rhizosphere: effects of legume intercropping and crop growth stage

Yadong YANG, Xiaomin FENG, Yuegao HU, Zhaohai ZENG

Journal Article

Effect of rhizosphere on soil microbial community and pyrene biodegradation

SU Yuhong, YANG Xueyun, CHIOU Cary

Journal Article

Integrated analysis of gut microbiome and host immune responses in COVID-19

Journal Article

Sulfur mediated heavy metal biogeochemical cycles in coastal wetlands: From sediments, rhizosphere to

Journal Article

Microbiome subsets determine tumor prognosis and molecular characteristics of clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome data

Journal Article

Understanding building-occupant-microbiome interactions toward healthy built environments: A review

Shuai Li, Zhiyao Yang, Da Hu, Liu Cao, Qiang He

Journal Article

Meter-scale variation within a single transect demands attention to taxon accumulation curves in riverine microbiome

Journal Article

Human microbiome and prostate cancer development: current insights into the prevention and treatment

Solmaz Ohadian Moghadam, Seyed Ali Momeni

Journal Article

Improving the efficiency and effectiveness of global phosphorus use: focus on root and rhizosphere levels

Uwe LUDEWIG, Lixing YUAN, Günter NEUMANN

Journal Article